publications

Selected research (see Google Scholar for all articles)

2025

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    Infection risk of rituximab monotherapy versus combination therapy with rituximab and mycophenolic acid in systemic sclerosis: A retrospective cohort study
    JB Kang*, K Nabel Smith*, M Cho, J Silverman, A LaChance, and JS Smith
    Journal of the American Academy of Dermatology, Jan 2025
    PDF

2023

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    Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution
    JB Kang, AZ Shen, S Gurajala, A Nathan, L Rumker, VRC Aguiar, C Valencia, KA Lagattuta, F Zhang,  ..., MB Brenner, M Gutierrez-Arcelus, Y Luo, S Sakaue, and S Raychaudhuri
    Nature Genetics, Dec 2023
    PDF
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    Deconstruction of rheumatoid arthritis synovium defines inflammatory subtypes
    F Zhang, AH Jonsson, A Nathan, N Millard, M Curtis, Q Xiao,  ..., JB Kang,  ..., K Wei, DA Rao, LT Donlin, JH Anolik, MB Brenner, and S Raychaudhuri
    Nature, Nov 2023
    PDF
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    Methods and insights from single-cell expression quantitative trait loci
    JB Kang*, A Raveane*, A Nathan, N Soranzo**, and S Raychaudhuri**
    Annual Review of Genomics & Human Genetics, Aug 2023
    PDF

2022

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    Cross-tissue, single-cell stromal atlas identifies shared pathological fibroblast phenotypes in four chronic inflammatory diseases
    I Korsunsky, K Wei, M Pohin, EY Kim, F Barone,  ..., JB Kang,  ..., A Filer, F Powrie, CD Buckley, MB Brenner, and S Raychaudhuri
    Med, Jul 2022
    PDF
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    Repertoire analyses reveal T cell antigen receptor sequence features that influence T cell fate
    KA Lagattuta, JB Kang, A Nathan, K Pauken, AH Jonsson, DA Rao, K Ishigaki**, and S Raychaudhuri**
    Nature Immunology, Mar 2022
    PDF
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    Co-varying neighborhood analysis identifies cell populations associated with phenotypes of interest from single-cell transcriptomics
    YA Reshef*, L Rumker*, JB Kang, A Nathan, I Korsunsky, S Asgari, MB Murray, DB Moody, and S Raychaudhuri
    Nature Biotechnology, Mar 2022
    PDF

2021

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    Efficient and precise single-cell reference atlas mapping with Symphony
    JB Kang, A Nathan, K Weinand, F Zhang, N Millard, L Rumker, DB Moody, I Korsunsky**, and S Raychaudhuri**
    Nature Communications, Oct 2021
    PDF

2020

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    Strain-resolved microbiome sequencing reveals mobile elements that drive bacterial competition on a clinical timescale
    S Zlitni, A Bishara, EL Moss, E Tkachenko, JB Kang, RN Culver, TM Andermann, Z Weng, C Wood, C Handy, HP Ji, S Batzoglou, and AS Bhatt
    Genome Medicine, Dec 2020
    PDF

2019

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    Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly
    JB Kang*, BA Siranosian*, EL Moss, N Banaei, TM Andermann**, and AS Bhatt**
    BMC Bioinformatics, Dec 2019
    PDF